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The size taken for a word, given by the parameter kmer, controls the sensitivity and speed of the program.

Increasing the kmer value decreases number of background hits that are found.

Anyone can get a free one-time trial allocation of 5,000 service units. (The current price is

There are several programs in this package that allow the alignment of protein sequences and DNA sequences.

From the word hits that are returned the program looks for segments that contain a cluster of nearby hits.

It then investigates these segments for a possible match.

Total RNA was prepared using TRIzol reagent (Invitrogen) and TURBO DNase (Ambion).

Total RNA was used to synthesize c DNA with random primers.

.015 per service unit.) For the most up-to-date information about rivanna, see the ARCS web page:

Research groups can get a free "standard allocation" of 100,000 service units by submitting a request that includes a description of their research. The following information is intended to help Physics users get up and running quickly on the cluster.

The cluster is managed by the UVa Advanced Research Computing Services (ARCS) group.

Usage of rivanna is metered in terms of "service units" (currently equal to the number of hours used), with each research group being allocated some number of service units.

The original FASTP program was designed for protein sequence similarity searching.

Because of the exponentially expanding genetic information and the limited speed and memory of computers in the 1980s heuristic methods were introduced aligning a query sequence to entire data-bases.

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There are several programs in this package that allow the alignment of protein sequences and DNA sequences.

From the word hits that are returned the program looks for segments that contain a cluster of nearby hits.

It then investigates these segments for a possible match.

Total RNA was prepared using TRIzol reagent (Invitrogen) and TURBO DNase (Ambion).

Total RNA was used to synthesize c DNA with random primers.

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There are several programs in this package that allow the alignment of protein sequences and DNA sequences.From the word hits that are returned the program looks for segments that contain a cluster of nearby hits.It then investigates these segments for a possible match.Total RNA was prepared using TRIzol reagent (Invitrogen) and TURBO DNase (Ambion).Total RNA was used to synthesize c DNA with random primers.

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